The following is a list of the trophies from the Pokémon series that appear in the 3DS. There are 83 trophies in total.
| Name | How to Unlock | Picture | Description |
| Pikachu | Classic Mode | 75px | TBA |
| Pikachu (EX) | All-Star | [[]] | TBA |
| Lucario | Classic Mode | [[]] | TBA |
| Lucario (EX) | All-Star | [[]] | TBA |
| Charizard | Classic Mode | [[]] | TBA |
| Charizard (EX) | All-Star | [[]] | TBA |
| Jigglypuff | Classic Mode | [[]] | TBA |
| Jigglypuff (EX) | All-Star | [[]] | TBA |
| Greninja | Classic Mode | [[]] | TBA |
| Greninja (EX) | All-Star | [[]] | TBA |
| Poké Ball | TBA | [[]] | TBA |
| Master Ball | TBA | [[]] | TBA |
| Meowth | TBA | [[]] | TBA |
| Electrode | TBA | File:Electrode3DS.jpg | TBA |
| Goldeen | TBA | [[]] | TBA |
| Staryu | TBA | File:Staryu3DS.jpg | TBA |
| Eevee | TBA | [[]] | TBA |
| Snorlax | TBA | [[]] | TBA |
| Moltres | TBA | [[]] | TBA |
| Mew | TBA | [[]] | TBA |
| Togepi | TBA | [[]] | TBA |
| Bellossom | TBA | [[]] | TBA |
| Entei | TBA |  |
TBA |
| Suicune | TBA | [[]] | TBA |
| Lugia | TBA | [[]] | TBA |
| Gardevoir | TBA | [[]] | TBA |
| Metagross | TBA | File:Metagross3DS.jpg | TBA |
| Latias and Latios | TBA | [[]] | TBA |
| Kyogre | TBA | [[]] | TBA |
| Deoxys | TBA | [[]] | TBA |
| Abomasnow | TBA | [[]] | TBA |
| Palkia | TBA | [[]] | TBA |
| Giratina | TBA | File:Giratina Trophy.jpg | TBA |
| Darkrai | TBA | [[]] | TBA |
| Arceus | TBA | [[]] | TBA |
| Victini | TBA | File:Victini3DS.jpg | TBA |
| Snivy | TBA | File:SnivyTrophy3DS.jpg | TBA |
| Oshawott | TBA | File:OshawattTrophy3DS.jpg | TBA |
| Zoroark | TBA |  |
TBA |
| Kyurem | TBA | [[]] | TBA |
| Keldeo | TBA | [[]] | TBA |
| Meloetta | TBA | [[]] | TBA |
| Genesect | TBA | [[]] | TBA |
| Chespin | TBA | [[]] | TBA |
| Fennekin | TBA | File:FennekinTrophy3DS.jpg | TBA |
| Fletchling | TBA | File:FletchlingTrophy3DS.jpg | TBA |
| Spewpa | TBA | [[]] | TBA |
| Swirlix | TBA | [[]] | TBA |
| Inkay | TBA | [[]] | TBA |
| Dedenne | TBA | [[]] | TBA |
| Xerneas | TBA | [[]] | TBA |
| Gastly | TBA | [[]] | TBA |
| Koffing | TBA | [[]] | TBA |
| Petilil | TBA | [[]] | TBA |
| Chandelure | TBA | [[]] | TBA |
| Cryogonal | TBA | File:CryogonalTrophy3DS.jpg | TBA |
| Magnemite | TBA | File:Magnemite3DS.jpg | TBA |
| Zapdos | TBA | [[]] | TBA |
| Milotic | TBA | [[]] | TBA |
| Shaymin | TBA | [[]] | TBA |
| Whimsicott | TBA | [[]] | TBA |
| Emolga | TBA | [[]] | TBA |
| Reshiram | TBA | [[]] | TBA |
| Zekrom | TBA | [[]] | TBA |
| Helioptile | TBA | [[]] | TBA |
| Yveltal | TBA | [[]] | TBA |
| Prism Tower | TBA | [[]] | TBA |
| Ivysaur | TBA | File:Ivysaur3DS.jpg | TBA |
| Mega Venusuar | TBA | File:MegaVenusaur3DS.jpg | TBA |
| Squirtle | TBA | [[]] | TBA |
| Mega Blastoise | TBA | [[]] | TBA |
| Hitmonlee | TBA | File:HitmonleeTrophy3DS.jpg | TBA |
| Articuno | TBA | [[]] | TBA |
| Mewtwo | TBA | [[]] | TBA |
| Pichu | TBA | File:PichuTrophy3DS.jpg | TBA |
| Celebi | TBA | [[]] | TBA |
| Proygon-Z | TBA | [[]] | TBA |
| Audino | TBA | File:Audino3DS.jpg | TBA |
| Sylveon | TBA | [[]] | TBA |
| Pokémon Trainer | TBA | [[]] | TBA |
| Trainers (X·Y) | TBA | File:Serena&CalemTrophy3DS.jpg | TBA |
| Professor Sycamore | TBA | [[]] | TBA |
